Sequence Analysis Software Free Mac

Posted By admin On 05.10.21

Sequence Analysis Software Free Mac Online
Sequence Analysis Viewer Download
Dna Sequence Analysis Software

View, edit, and convert chromatograms. Trim low quality ends automatically.

A great all-round tool. Cn3D say it out loud “see in 3D”. This great piece of software from NCBI is a sequence viewer with a difference. Not only does it perform 2D alignments, but it also allows the user to see the position residues in the 3D protein sequence. Great for mutagenesis studies.

Program description

DNA Chromatogram Explorer Lite is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.

The Mac Sequence View Software suite comes with three programs to enhance your productivity when performing DNA sequence analysis. The main program - Mac Sequence View - is a drag and drop.
Try MacVector 18.1 For Free! MacVector is a sequence analysis application for Macintosh computers that lets you manipulate, document and analyze DNA and protein sequences. You can use MacVector to create great looking plasmid maps, construct vectors and clones with a few simple clicks, design primers, align proteins, assemble sequences or even.
MEGA 11 (64-bit) (for macOS) MEGA is provided FREE for use in research and education (see terms below) To download MEGA, please fill in the information requested below about how and where MEGA is used. This anonymous information is important for obtaining funding support for the maintenance and further development of MEGA.

The Lite version of Chromatogram Explorer is freeware.

How to use it

Exploring your samples

Start DNA Chromatogram Explorer and navigate to your DNA sample files (chromatograms).

Sequence Analysis Software Free Mac Online

All chromatograms in that folder will be displayed in the right panel (see picture below). SCF and ABI (ABI, AB, AB1, AB!) chromatogram files are supported. Low quality ends are shown in dark gray color. To view non-chromatogram files (FASTA, SEQ, TXT) just double click them.

Converting your samples

Press 'Convert' or 'Convert all' and your file will be saved as SCF or FASTA (as you choose).

Automatic end trimming

With DNA Chromatogram Explorer you can automatically trim low quality ends of all chromatograms in a folder. Please see this short tutorial.

Sequence Analysis Viewer Download

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How to install it

DNA Chromatogram Explorer is delivered in a small package together with other free molecular biology tools.

You don't need administrator rights in order to 'install' this package.

Download the package
Double click it to unpack it
Specify the destination folder (where to unpack it)
Go to the destination folder and double click the program you want to use

Name	Chromatogram Explorer Lite
Version	3.2
Package size	~ 5 MB
Download time	less than 12 seconds (for DSL)

Uninstall

DNA Chromatogram Explorer installs zero files in your system. Therefore, you don't need to uninstall it. To uninstall the DNA Chromatogram Explorer, just delete it.

Portability

Dna Sequence Analysis Software

This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.

System requirements

DNA Chromatogram Explorer can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system.

Lite versus Pro

Feature	Lite	Pro
Display sample's content as you browse through your folders
Highlight low quality regions
Manually trim low quality end
Automatically trim low quality ends (batch)
Convert between miscellaneous formats
View FASTA, SEQ, TXT samples
View SCF, ABI, AB, AB!, AB1 samples
View sample's properties & statistics
View confidence scores
Extract bases from chromatograms (copy to clipboard)
Perform file operations (copy/delete/move samples)
Show all chromatogram files in a folder
Convert all samples in a folder
Double click a file to open it

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Similar bioinformatics tools included in this package

Name	Description
DNA Sequence Assembler	DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
GBK to FASTA converter	GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
ABI to FASTA converter	ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.
Grid cell counter	Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
Convertrix	Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples.
DNA Counter	DNA Counter shows the proportions between nucleotides in a DNA sequence (GC to AT ratio).
Chromatogram Explorer	DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.
Everything to FASTA converter	Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported.

Home > Mac Software

This software isfreeware or shareware, only for Macintosh computers! Clicking on thelinks below will start the download

DNA Strider
A bit dated but still great full featured sequence manipulation application for the mac. Freeware

Amplify v1.2
This software is for use in designing, analyzing, and simulating experiments involving the polymerase chain reaction (PCR). Given a template sequence and two primers, it will predict the possible outputs of the PCR, taking into account also weak matches to the target sequence. Freeware, thanks to Bill Engels

DNAid v1.8
As the author says, 'DNAid is not a heavyweight package which will run your 'just-sequenced gene' through every prediction or analysis algorithm in the known universe.' However, it is a very usefull application that allows to perform all the basic manipulations of DNA sequences such as restriction mapping, translation, reverse-complement and others. Freeware, thanks to Frédéric Dardel

MacPlasmap v1.8.2
It draws, stores, and prints high-quality circular plasmid maps with the data you specify. Fully functional. Shareware! Please read the enclosed documents before using the application

Primers! v1.0
Primers! is a very popular Macintosh utility to aid scientists in picking precisely the PCR oligos which fit their needs.Imput the target sequence and a range of selection, and Primers! will sugest the best PCR primers to amplify the selected region. Text macro. Shareware at your discretion, thanks to Richard J. Resnick (Apple Pi Software). Please read the 'Read Me' file before using the application. Requires any Macintosh with a Color monitor and System 7 or beyond.

RasMac v2.6
RasMac is the Mac version of RasMol, a molecular graphics freeware program intended for the visualisation of proteins, nucleic acids and small molecules, written by Roger Sayle.You can downlod structural coordinates for a molecule of your choice -FOR INSTANCE HERE-and view, rotate and customize the look of the molecule right on your Mac even with no structural biology background (Thank you Roger Sayle!). Great for educational purposes. An excellent web site maintained by Eric Martz, for download and informations on RasMol and CHIME, a RasMol version designed as browser plug-in, can be found HERE. Before using RasMac, please read the enclosed 'Notice' file

SeqView v1.0.1
SeqVu is an alignment editor with analysis options that allows you to work quickly and simply with multiple sequences. It is ideal for manually correcting and obtaining publication-quality pictures from alignments produced using alignment software such as ClustalV or GCG pileup. Fully functional. Shareware.

Speakquencer v1.4
Speakquencer is a tool for entering and/or verifying nucleotide or amino acid sequence information. The application reads pre-existing sequences or speaks sequence as it is entered form the keyboard. Freeware, thanks to Christian Fritze

Swiss-PdbViewer 4.1 (Macos, Linux, Windows)
Free Molecular visualization software by Nicolas Guex and Manuel C. Peitsch. Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyse several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface. For informations, tutorials, and to download the viewer for other platforms (PC, SGI, Linux) visit the Swiss PdbViewer official site at expasy.

Sequence analysis software free mac software

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